Coarse-grained models generated by GDash

  • Free DNA at T=300

  • Automatic model of extended chromatin

  • Uniform/condensed chromatin model

  • Manually assigned nucleosome conformations and positions


    GDash allows bi-direction communication between informatics and physical models

  • Chromatin model using tracks information

  • Minimization using LAMMPS

  • Colors from informatics tracks

  • All atom nucleosome model for a selected sequence

    Supported by

    This effort was supported by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant number 5 P20 GM103424-15 and 3 P20 GM103424-15S1. Partially support also received from NSF through cooperative agreement OIA-1541079 and the Louisiana Board of Regents.