March 2022
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Group Meeting 3/10/22
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bishop, jli, jtd, rsu

LBRN meeting
Meeting Time/Place
	MWF 3:30-5:00/lab
BPS review
  upcoming webinars
Ran's Thesis
JTD: https://ndb.rice.edu/
JLI: 
Computers
  jti

JLI/bishop meeting 1week or MORE T/Th 1-3pm
RSU/thesis schedule
JTD:  setup REU at RICE 


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Group Meeting 3/21/22
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HW:
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battery for TMB5 bishop will contact Joshua to do this
ade is doing backups again

SW:
*****
download and install AmberTools21 (22?) make sure to compile w/ Python3
Ran will get Jihao to setup and bishop will install on DNA

proper install of CUDA and amber w/ CUDA... Joshua?

why do these notes not appear on Bishop's Lab web pages

Admin:
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LBRN meeting/ same poster
	-updates to do:
		relate to G-Dash 
		show coarse-grained models

TcB BPS report:
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see tom's notes
papers to review


Rsu:  numodeller w/ support for Linker histones
	Michael Poirier look for his Pho4, Gal4, Oct4
Jli: Tues: start pdb to ssimulation workflows
	Bin Zhang @ MIT
	3SPN 3beads/nuc model by de Pablo JCP 2013 with C-alpha GO model
	Latham/BZ, JPCB 2019, JCTC 2019, 2021
	Ding BZ, JPCB 2020
	Parsons, BZ JCP 2019
	TAMD Ding, BZ Nat Comm 2021
	BZ NAR 2021 ... PRC2 mediated unfolding


JtD
   -summer REU type things
	JMol Biol 2021 May 14;433(10):166902.
	Woods and Werezinski on tmbshare


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Group Meeting 3/28/22
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HW:  bishop coordinating
	I think RNA is end of life
	plan: NANO gets  6 or 8 HDs 
		do really need them  and data in RNA?

SW: all OS at 15.3 

TK/python discussion



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Group meeting 4/4/22

HW: new battery for TMB5 (feeds tmb4 too)
	still needs cyberpower setup
    nano will get 8x18TB Raid6 HDs
    gua AND thy are currently SPS laptops

SW: Amber20?.
	amber21tools
   see Joshua for this
	sync the software/yast on all
	pip3 needs be same on all
		tmb4 and check rsu007's list from tmb4 (or wherever)
   
SCI: LBRN abstracts and registration due
	Ran will update abstract and bishop will submit
	
ADMIN: do John daigre's CV