January 2020
*****************


MOnday 1/13/2020
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HW:
	TODO:Setup CYT and old DNA
	DONE:Move ADE to Engineering Annex
	TODO:Move CIMMHub to 303, install rail
	Gua HD is failing
Zilong:
	TODO:Meeting on Thursday afternoon
	TODO:G-Dash minor revision
		Abstract, RMSD, C.G. model
	TODO:Magic Snake paper
RSU:
	TODO:Meeting on Tuesday 1:30/2:00
	TODO:Plans for kinking paper and PCA
	TODO:Check modeling process for 601 and NucA
		177bp sequence vs. helical parameters
		Reading from Watson strand vs. Crick strand
Jiahao:
	TODO:Meeting on Wednesday morning 11:00
	TODO:3D surface plot for all six hps from hdf5 files
BPS:
	Feb 15-19
	Talk-->rsu
	Poster-->Zilong
	TODO: Logo design for MGO subgroup, QR code with logo in the middle
	TODO: 100 signatures, how this is going to work out
Others:
	Feb 6-->NSF proposal
	Feb 24-->Zilong goes to NYU	
	March 7-->Graduation for Zilong


Monday Jan 27, 2020
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HW:
	2X HDs for GUA ordered
	CIMMHUb moved to Server Room. 
		certification: 
		zli007 has private keys setup for access to cimmhub wout password
			see ~zli007/.ssh for keys
		notes on how to activate/refresh certificate will be 
			sent via email to group by zilong

	ADE moved to E.A. Gbps switch for EA w/ Schales/Higam in works
		it's 100Mbps
	CYT setup?
		NVIDIA
		rsu installed all software and repos from gua 
		nvidia drivers are still problem
			nouveau drivers are being used
			RSU removed and reinstalled via YAST 
			 this breaks the Nvidia drivers for CYT
				GTX 8800 card.. (old ) 
			did not try installed "the hard way" from source and compile
		FIREWALL/SSH access?
			rsu/zli/jli will fix this by the end of hte week
			
SW:
	HTTPS: on DNA:  zli will fix this  by the end of hte week
	PyPY and John Gentle:
		zli: will follow up on pypy and genomedashboard.py
 	ACCESS KEYS zli will get this by the end of hte week or sooner and verify acces and put note in TMB-lab group emil on what to do to get access
		privare keys access from John Gentle`
		tmbshare will have notes too.
	Docker on TMB5:
		zl: dockers installed and working and can make and application
		zli will give demo during to group thursday 
	yppasswords on DNA...others...?
		RSU will track down what is/is not working correctly
			passwords don't update


		ALL: will review SSH and Firewall config of all computers in the group		
	
SCI:
  SGCI: 
  Fronter Allocation Request
		RSU: will find announcment and deadline and details and forms
		collect the info : SW rquirements vmd,amber, namd, gdash, HW requirements containers and timeing and gpu use etc..
		zli should request xsede portal account if not already 	
		goal: is run Gdash local container and submit to TACC queue or run internactive as container on TACC resources w/ push of HPC to queue
			or even interactive... 
  BPS: 
 	poster reviews?
		zilong thursday give poster review AND docker demo
	talk review
		RAN Tuesday is Ran's talk: :20minutes

	papers:  ran discusses the paln with bishop 
			zli schedules time to review/submit w/ bishop
			both should be done befreo wed
		
CLASS STUFF
	Jiahao: wed update on PCA outline of you paper or summary of results see the "syllabus" deadlines 
		review the "syllabus" and plans for completing
	Phys261/2
		TCB push out ran's email to class on Monday

BPS:
	QR code updated see email form zilong
	places to eat.DRInks instead
		time it for 9:30
		meeting spot a hotel or conv. center 
			make a shareable spreadsheet w/
					name    times available :  6:00 6:30 7:00 7:30 8:00 8:30 9:00 9:30 10:00   3-4 spots 
				spots: conv. center, zli/rsu hotle lobby/bar, bishop hotel lobby/bar, other bar1 , other bar 2
					
		
IMP DATES:
	Feb 15-19 BPS
	Feb 20  Zilong to NYC
	Feb 24-->Zilong goes to NYU	
	March 7-->Graduation for Zilong