September 2019  Fall 1/4
*****************
Wed Sept 4
***********

1) HW:
	cimmhub up: yes: 
	
	GUA's RAID6 at 100% means backups are failing
		others mostly OK

	RNA is OpenSuse 42.3 ... some security issues here
		
2) SW:
	certificates:
		CIMM is good
		DNA has cronjob
		/autotmb/home/tmbshare/admin/bin/renew-cert.tcsh
	 	see	/autotmb/home/tmbshare/admin/cert/renew-cert.log
	zypper update no recently.
		last one end july...tmb5 
		check the repos in /etc/zypp/repos.d  (same as appear in yast2)
			try to resolve by idenfying the conflicxt in yast2
3) Admin stuff
	appointment letters
	bishop has to sign his
	ran (on cimm) after zilong graduates cimm
4) Science
	TMB Library: JCIM
		under review
	GDash: 	BJ
		to be resubmitted	
		Sept 13
	GDash VM
5) University stuff
	graduation PoS stuff
		RSU: 
			oral exam: doodle for end sept.
				see PoS:  Swayer, derosa, ramu, vlachos, newman, bishop
				spring

		Zilong: 
			sept 20 draft is due at University
			oct 4 must have defense done
			pradeep, turner, hou, gerganov	
			
	grp  meetings

6)  BPS Feb 15-19 in San Diego. Member organized session on nucleosomes
	dues sept 16... list of speakers and titles
		Ran w/ 	 all atom sims ...

7) SGCI:
	regular meetings monday
	G-Dash VM w/ bsihop
	python w/ zilong
	JG?: 

DONE: organized all papers on overleaf

TODO: Ran: POS update w/ course info 
	and verify substitutions
	schedule your oral defense a.s.a.p
TODO:  zilong: POS (plan of study)verify, verify, verify
	
TODO: zilong: check next release of OpenSuSe and make plan to upgrade to Opensue 15XX
	
TODO: ran:  finish zypper updates
TODO: bishop: follow up w/ JCIM publish agreement 	
TODO: calendar updates
		zilong deadlines
		ran deadlines


Group meeting 9/11
*********************
HW):  GUA out of disk space -> backups not working

SW):  matlab 2019a works on all
	zypper update all workstations and DNA
      RNA is almost out of life
		42.3  needs 15.1
		15.0 ends nov 2019... 15.1 is avail.

Sci): 
	JCIM: TMB-Lib accepted need  to watch for proofs
	GDash:
	NanoCar:
	MagicSnake
	Kinks:
	
	BPS2020: Abstracts Oct 1
		bishop has listed RSU on the list
	SGCI:
	
Adm):  PlanStudy (POS)
	RSU: oral Oct 1: 8-9 (not calendar)
		TA T/TH for Phys 262 2-6 w/ Rahoul
		that's it
	ZLI:  if not this grad. this 1/4 then timeline is free up until the end of 1/4

		HAVE to get info from Collin wick

Teaching: 

NOTE: Writing:
	Sandi Richardson: get business cards in grad office
	Paula Brown in the writing center in wyly

Wed 9/18/2019
**********************
ZLI met w/ Brown and writing center...1 hr/day is free
RSU not yet

DONE:  SGCI VM../w/ the minimal GDash-min
	20GB vm but it works... needs old matplotlib and other stuff
	TODO: reduce to 12GB
	can be found in ~bishop/VirtualBox\ VMs/GDash-VM/
	TcB will move to ~tmbshare once it's shrunk

BPS: abstracts DUE Tues OCT 1.
	we have 8 speakers + 1?
	go for 16? TcB asked BPS about

DONE:  Oral swcheduled for Oct 1. from 8-9



Sept 25, 2019
*******************
HW: 3rd floor still 10-50Mpbs to outside world
	Danny is working on new switch part
	has been since 9/11 or 9/12 almost 2weeks
	
SW: zypper update; postgress on TMB5 was linked to leap tumbleweed
	please check that 
	/etc/zypp/repos.d/
	is same on all computers (except RNA b/c tha's old suse)

	unify the workstations
		unify the servers... rna and dna should be "the same"
SCI: 
	zilong's paper on track	 for Friday?
	ran's oral on track for Thursday

TODO: for 9/25 have BPS abstracts ready... 
		get them submitted before 9/27
	get them done by email

TODO: a list of "missing" sims has been generated
		needs to be computed
	see list from email on 9/20 subject sims failed in tmb library
	see xls in /autotmb/home/rsu007/Public/sim-failed	

LATER:  install/upgrade to RNA to 15.1... date in november
	have it serve as backup for eve3ryting
	GUA,ADE no longer really needed
	plan for backups, solved by RNA cominb backup w/ 15.1