May 2019
**************

Wed May 5
**
HW: 
	still cleanup/organize
	retire/sort/store old computers
DATA:
	data
	simulations
	home 
	projects
 backups:
	not crons running on gua
	gua:/autotmb/home/tmbshare/admin/bin
	used "crontab gua-crons" to start odd/even backups of /home and /simulations
	but less than 1TB left on gua:/raid6

FUNDING
	NSF Vidal(??) from comp scie said not to EAGER
	but need to talk to Peter McCartney in NSF-bio directorate
	but maybe shoutl be discussing w/ Stapleton

	need a 2page write up of what we do

PAPERS:
	G-Dash: submitted/fixed and sent to reviewers
	/autotmb/home/tmbshare/Public/Papers/2019/GDash-Workflow/BJ-Submitted/
	status is at 
	https://biophysj.msubmit.net/cgi-bin/main.plex?el=A3GY7LrY3A1KQp5F2A9ftdciX2YoO0wGXEWQzOqwPJMQZ	
	it's out for review

	IBIOMES:  submitted; 
	March 23, April 16 cournia-office@jcim.acs.org
	said it  was out for review
	no updates as of 5/1
	see https://acs.manuscriptcentral.com/acs

Graduate Night at Lambright 
	thursday at 6pm

SGCI:
	plans for THursday and Friday

PhDs and May10 reviews:
	ran prep for May10
		hightlight activties as much as science
			LesHouches and BJ-Subgroup
			and nuABC effort -> nuBuilder  nuBA (nuc build and analyze)
				4^(147) 

FUTURE:
	BJ Aug 31(?)
	Appl;ication G-Dash: Tale of Tails and Needle in Haystack
		4^(147) -> 3 w/ ER/ERE
		G-Dash perpsetive w/ CG or in all atom detail or BOTh
	NuSims:
		601 and kinks
		refine Rajib's kink model:
			83 sequences to check and nuc. positioning
		
		NuBuilder and Analysis w/ NMA


**********************************************
Wed May 8
**********************************************
SGCI review:
	refocus: it's not a webserver we want but tools that fit into workflow
		nuBuilder: (epicypher... and others that make designer nucleosomes)
			identify capabilities that will be supported
			rapid , cheap, easy, portable
		gash (prototype... emphasis is on gdash.py)

MS/PhD status/review
	zli: schedule meeting w/ me
	rsu: schedule meeting w/ me

ZLI's preview masters
	

Advisory Meeting Reviewa
	9-9:45 Thursday
	

Amber18install/update?

CLASS:
	
SummerPlans:
	
HW

SW



Wednesday 5/22
*****************

Dan Capurso:
	
CIMM: 
	register fro zilong and ran

SGCI:
	template: 
		DB/postgres and dalliance
		communication
HW
SW

Papers
Ran's paper: 
	strategy:
	601 and meta-analysis
Schlick Review

	
Wednesday May 29
*********************

Science:

Albany:
	by end of this week I need to see
	1) CIMM  poster
		check on template for CIMM
	2) Albany Poster
		check on size restrictions of Albany
	
CIMM:
	paper not yet acceptable
	poster I need to see it by end of day

	10minute talk
	we'll let Kaming do it

SGCI:
	how is this working
		Ran are you involved in this?

Papers and Plans
	PLEASE ADD DETAILED GOALS INTO google calendar for each WEEK!
	do it now
	make a ZLI and an RSU google calendar