July 2017
******************

Thursday July 20
**********
-COMPUTERS
	SW: namd2.12 needs cuda > 3.0?
		VMD may need newer cuda than cyt/tmb1
		nvidia on ADE not working
	HW: ??
-prep for CIMM technical meeting
	papper submitted: located in /home/tmbshare....	
	poster needs printing see email from Ramu
		electyronic copy in 
	faculty/student profiles
	travel for CIMM

DONE: CIMM student profiles: DONE on ~bishop/Documents

RSU: reviews figures and bibs for his paper(s)
ZLI: reviews figures and bibs for his paper

TODO: email zli and ran's profiles to Amber or put on google drive.


Thursday JUly 27
***********************
HW:
NOTE: ADE reports that one HD in the raid is corrupt

ade 106% cat /etc/mdadm.conf
ARRAY /dev/md/0  metadata=1.2 UUID=38240a63:b86f0510:3670b48f:f4c758a3 name=ade:0
ARRAY /dev/md/raid5  metadata=1.0 UUID=06315e04:f584df0a:7d6de80f:d976a2cb name=ade:raid5
(not sure why there are two in this?)

/dev/md127                            20T   18T  1.9T  91% /raid5

ade:/home/admin # mdadm --detail /dev/md127 
/dev/md127:
        Version : 1.0
  Creation Time : Mon May 12 21:19:18 2014
     Raid Level : raid5
     Array Size : 20511853824 (19561.63 GiB 21004.14 GB)
  Used Dev Size : 2930264832 (2794.52 GiB 3000.59 GB)
   Raid Devices : 8
  Total Devices : 7
    Persistence : Superblock is persistent

  Intent Bitmap : Internal

    Update Time : Thu Jul 27 03:58:57 2017
          State : clean, degraded 
 Active Devices : 7
Working Devices : 7
 Failed Devices : 0
  Spare Devices : 0

         Layout : left-symmetric
     Chunk Size : 128K


           Name : ade:raid5  (local to host ade)
           UUID : 06315e04:f584df0a:7d6de80f:d976a2cb
         Events : 165237

    Number   Major   Minor   RaidDevice State
       0       8       17        0      active sync   /dev/sdb1
       1       8      129        1      active sync   /dev/sdi1
       2       8       33        2      active sync   /dev/sdc1
       3       8       49        3      active sync   /dev/sdd1
       4       8       65        4      active sync   /dev/sde1
       -       0        0        5      removed
       8       8      113        6      active sync   /dev/sdh1
       7       8       97        7      active sync   /dev/sdg1
ade:/home/admin # cat /proc/mdstat
Personalities : [raid6] [raid5] [raid4] 
md127 : active raid5 sdg1[7] sde1[4] sdd1[3] sdi1[1] sdb1[0] sdc1[2] sdh1[8]
      20511853824 blocks super 1.0 level 5, 128k chunk, algorithm 2 [8/7] [UUUUU_UU]
      bitmap: 22/22 pages [88KB], 65536KB chunk

unused devices: <none>
ade:/home/admin # 




ZLI: /home/tmbshare/Public/Papers/2017/ICM-GB
	dna.engr.latech.edu/~zli007/ICM-DGB/redirect.html
	
RSU: /home/tmbshare/Public/Papers/2017/Nucleosome-Ibiomes