July 2016
******************

June 22
**********
blaine, anthony, li, ran

projector:
	
CIMM: 


NOTES:
June 25: NIH propposal due
	need data:

RSU: redo  six plots same axis values
	/autotmb/simulations/rsu007/simulation/601-data/1KX5
	range and K=14 seem OK

BGR:  601wT(440) and 601nT (185) 
	
ZLI:

AAA:  tiny sue works w/ some automount/nfs issues
	big sue seems to work but not iso/HD install tested
		shoudl give tinysue all it needs w/ the NFS mounts


June 29
**********
HW/SW: 
        matlab & SAS download install
	
	vbox some version mismatch or something
	updates 
	install leap on all

	projector

CIMM:
 the lab will present two posters 1 paper
	July 11
Poster 1: update the old hub how to
  "Hub How TO"
 ~tmbshare/Public/Posters/2016/CiMM-Tech-April8/CIMM_Poster_tcblab_v9.odp	 k
Poster 2: accessing RW hdf5 data on the hub
  "Data Management/Sharing on the Hub"
	and demo some softwares

	registration grad retreat
		RSU??

	paper & poster:
	
	review of old and new websties
		https://cimmhub.laepscor.org/
		http://cimmhub.lsu.edu/resources/browse
	making new hub look like old
	hdf5
		view, manipulate hdf5 
		couple it w/ web

https://www.hdfgroup.org/products/hdf5_tools/SWSummarybyType.htm
	  pandas:  rsu:  tilt, rmsd-H2A
	  pytables: rsu: slide, rmsd-H3
	  hdfview java: aaa: twist, rmsd-H2A
	  paraview: bgr: roll, rmsd-pro
	  matlab: zilong: shift, rmsd-nuc
	  R:  zilong: rise, rmsd-H4
	  SAS: ??
	  OTHERS:  bishop

	  RSU: post an HDF5 file w/ data someplace local
		AND on the new hub
	  ALL: 
		access by url , by filename ,thru hub
		howto determine data content
		howto make a quick plot, plots
		howto do some calculations w/ data
			-stats:  mean,std,range,histogram
				normality tests
			-advanced calcs
				Fourier Filter
				normal mode analys/PCA
				curve fit


	bishop:
	iBIOMES on ADE 
		http://ade.engr.latech.edu/~ibiomes/sims/
 	  			

	see email 6/17
	old groups  http://cimmhub.lsu.edu/groups/browse
	and development plan at 
	6/17/2016

The Symposium will be held on Monday, July 25 from 8:00 AM to 5:00 PM at Lod Cook in Baton Rouge.  Here is the information for proceedings and posters, to book a hotel sleeping room and to register for the meeting. Please kindly disseminate this to the students and participants.   So far we have 11 people registered for the Symposium and no posters/proceedings.  Here are three deadlines that you need to know.

 

Deadlines:       Proceedings                            July 11

                        Hotel-Sleeping Rooms           July 4

                        Registration                           July 20                       

 	

ALL: see notes above test hdf5 data/viz 
	get hub account on new hub
    projector meet friday 8:30 move tv check projector

RSU
	hdf5 data posted for file/localweb/hub

	updated for the ECTMB meeting
	 tom needs to make outline of talk
BGR
	accounts
		???
	sim status
	  601wt 528
	  601nt 302
		
	transfers and analysis
	  tom needs to follow up on account access

ZLI
	some new/old buttons
	mixing w/ ICM++
	the energyi minimizer

	1) jsmol instead of jmol	
		see at /home/www/htdoc/icm
	2) hide the 1kx5 button
	3) add a "temperature" slider
	4) right click "send to icm"
		to have 3x options
			a) automatic
			b) 30nm:
			c) positions
	?5) "energy minimization"
	5) make data show up properly in plot
	6) rework entire thing to use ICM++ /python

	
AAA
	update: R,rstudio, matlab,HDview w/ java,
	and make OPensuse 13.x to leap
	  VirtualBox running
	little Sue
	  did they do anything

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July 6: Discuss CIMM