Week 1: June 1 - 6
********************
 REU/RET starts
 BWIP program for Anik and Ran

Week 2: June 8 - 13
********************
  Bishop is at Albany June 9-13

  Prep for Patrick Shipman/Liman  visit
	Get "par files" for TH,SH, 1KX5 and 1KX5min collectedc and parameterized

  Workflow for MonoNucSimulator
	focus on analysis workflow
	see /simulations/Practice and
	svn /home/tmbshare/svn/repos/Projects/MonoNucSimulator/

  iRODS/iBIOMES 	
	configured and working on ADE and little fe
  ICM 
	svn,eclipse,swig skeleton fully working
  

Week 3: June 15 - 19
********************
  Prep Patrick Shipman/Liman  visit
	Manuscript for Superhelix Energeticcs
		proof of eqns proposed in Bishop Superhelix Geometry
		energy analysis TH,SH, against 1KX5 and 1KX5min
		

  Workflow for MonoNucSimulator
	apply analysis workflow to existing trajectories for 1KX5/2CV5: frog,mouse,human

  iRODS/iBIOMES 	
	can we put data into iBIOMES/iRODS from the workflow
  ICM 
	debugging,testing,improvements

Week 4: June 22 - 27
********************
  NIH R15 Proposal due June 25 for Bishop

  Shipman/Liman?

  Workflow for MonoNucSimulator
	continue : apply analysis workflow to existing trajectories for 1KX5/2CV5: frog,mouse,human
	AK & RS: develop simulation workflow tools, build any nucleosome any sequence

  iRODS/iBIOMES 	
	continue put data into iBIOMES/iRODS from the workflow

  ICM 
	debugging,testing,improvements

Week 5:  June 29 - July 4
********************

  Shipman/Liman?

  Workflow for MonoNucSimulator
	continue : apply analysis workflow to existing trajectories for 1KX5/2CV5: frog,mouse,human
	AK & RS: develop simulation workflow tools, build any nucleosome any sequence

  iRODS/iBIOMES 	
	display of data/plots in ibiomes	

  ICM 
	 performance analysis and validation