VDNA: Virtual DNA for VMD

Current Version 2.2
Download VDNA Save it as vdna.tcl. Then source it on VMD's command line (source vdna.tcl).

Please reference

"VDNA: The virtual DNA plug-in for VMD"
Bioinformatics 2009 25(23), 3187-3188; doi:10.1093/bioinformatics/btp566.

Other nifty tools and resources from our lab.

Web tools for making sequence dependent models of DNA (free DNA) and for Interactive Chromatin Modeling (ICM)

Send your favorite mathematical expressions to me and I'll start an image collection.

Twist Propagation

Circular Image

Trinucleosomes Image

Chromatin Image

Advanced Models

VDNA Overview Image